Transfer RNA-derived fragments are linked to translational control in human cancer cells (341)
The advent of deep sequencing technology has
unearthed entirely novel classes of small RNAs that are distinct from micro RNAs
(miRNAs) and small interfering RNAs (siRNAs). One such class of small RNAs are
those derived from transfer RNAs (tRNAs), commonly referred to as transfer RNA-derived
fragments (tRFs). tRFs
are processed from both the 5´and 3´end of the mature or primary tRNAs and some
of these have been shown to possess the ability to repress global translation or
specifically silence mRNA targets that have a complementary sequence. Our working hypothesis is that in highly proliferative
cells, tRFs are a product of the inadvertent processing of tRNAs. We predict
that tRFs then act to repress translation, and therefore proliferation, in a
negative feedback loop. We aim to unravel the mechanisms that tRFs use to mediate
this translational control. To do this, we used deep sequencing, RNA
immunoprecipitation, PCR and polysome profiling techniques to identify the
binding partners of two different sub-classes of tRFs: (i) 5’tRFs and (ii)
tRF-piRNAs in human cancer cell lines to infer how these may mediate
interactions with the translational machinery. The first of these tRFs
sub-classes included a 19-mer 5’tRF derived from the glutamate tRNA (tRFGln19),
which is highly expressed in HeLa cells and appears to associate with the
multi-synthetase complex (MSC); a collection of aminoacyl-tRNA synthetases responsible
for channelling translation. A second sub-class of these tRFs exhibits an extremely
high affinity for the Argonaute protein Hiwi2 in MDAMB231 cells, and are
similar to piRNAs in length (27-32 nt); and so are named tRF-piRNAs. tRF-piRNAs
exhibit miRNA-like abundances and appear to associate with chaperone proteins as
well as actively translating ribosomes in the cytoplasm. Here we present
evidence that tRFs directly target the translational pathway in order to
perform their function.